| Basic Information | |
|---|---|
| Taxon OID | 3300027909 Open in IMG/M |
| Scaffold ID | Ga0209382_10003776 Open in IMG/M |
| Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20766 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Tennessee | |||||||
| Coordinates | Lat. (o) | 35.8443 | Long. (o) | -83.9607 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014200 | Metagenome / Metatranscriptome | 265 | Y |
| F046306 | Metagenome | 151 | Y |
| F055772 | Metagenome / Metatranscriptome | 138 | Y |
| F097583 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209382_1000377615 | F097583 | N/A | MADTRKAVFVVAGSLAVTGVIVAVVFSLAGWAYRHRDASLHDGRLRRAVEQHPTIGQVSEGILAEPGNRALPTPASEEELRRLLARYPRGRADAIEAKRQRWRDLRVFEAGDVVYFLYFDEAGTLRDYELAGR |
| Ga0209382_1000377618 | F014200 | N/A | VHAGLLRAVELFNSGRFAEFQDALDGMTSSTRASSERQFYTLLKNVAEALLQLSDGDEQDAEGMLGAALRKMDEFMPRFRGLNVAALREDMQRLLGELRESRAGQRAEPAPSRLPRLRVLPE |
| Ga0209382_1000377620 | F055772 | AGG | MRVRHGRGRALIALAMSLVCAGAPRAVAAGISDDSPVTLPSGNLSTEAMSIRKVLEVYIRAVEAKDVQMFRTVKPNLSDEEEKRARAAFKSIQSQVVKMNVLSLDVKDGKATVKVSRRDTINGSIVSSFPQTFQLAKETAGWLIQDIGR |
| Ga0209382_100037763 | F046306 | N/A | MKRETVFIAAVAIAMALPACEYFDKSPTTPAPSPSPGTAALTISVLPDPLKILWVCPVADTYCYGSLDSTVTVTETAGVGGRVDNVDFTVRDALLGIELTTLHLSSEDIKTKAGTNRIEPMGKLAVRPIVEGYPVRSNLPRPSLNIDISVQVTDDKNNVVKTTKRVPVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |