| Basic Information | |
|---|---|
| Taxon OID | 3300027907 Open in IMG/M |
| Scaffold ID | Ga0207428_10000028 Open in IMG/M |
| Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 242204 |
| Total Scaffold Genes | 206 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 123 (59.71%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Tennessee | |||||||
| Coordinates | Lat. (o) | 35.8444 | Long. (o) | -83.9599 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001750 | Metagenome / Metatranscriptome | 642 | Y |
| F004903 | Metagenome / Metatranscriptome | 419 | Y |
| F006090 | Metagenome | 382 | Y |
| F026702 | Metagenome / Metatranscriptome | 197 | Y |
| F081677 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207428_100000281 | F081677 | N/A | MATRKDDDDIDYTAEGATPPHEKDDPTNAGYDEAAHKGPGRYGVAEGEGGVFGTTGGGTDKRGLHVEERPAVGTRRDGK |
| Ga0207428_10000028108 | F006090 | AGGA | VLVGPDPALAKVKGVMFGGRKTFLTDTIGEEGFHALLEKLTPRTRGYVKTPLASSWCEFESLIELDKAIHNELKAKYPNVLALIGAASAELGIGRIYRSLDSESLVQFLETNATFHDQYQKFGAVRFEKTANGARMIYSNYPCYSPVFCASAFGYFLESILRHGGTDPTVTETKCQCLGEKTCTFEMTWR |
| Ga0207428_10000028111 | F004903 | GGAGG | MSRYLQKISLRPYSDAEIWTGWELENRTGEVEGLILADDIPDDVLLAQYGVKEFQKIPSEYLDVGEFRQKQG |
| Ga0207428_10000028183 | F026702 | GAGG | MNFDRATISYPDGRVTQVTPQEFYTIPLGVRIELLTGGRMKFEKDKLPISPLEALKKK |
| Ga0207428_1000002884 | F001750 | N/A | MPKLITEIPSDLSRQIDRIIRDGWFPDQESVVREALSQFVDAKSFLGDSPRMLHRFAADALNDSKPDVALKFVSRALSLMVGQDITDFTLYQSLVELRVQILLVLGRDDDALASAEEAKEKLPNNPAIARWIEKLQKNRPRGEA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |