| Basic Information | |
|---|---|
| Taxon OID | 3300027906 Open in IMG/M |
| Scaffold ID | Ga0209404_10000701 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25620 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (52.63%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Tropical Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 15.249 | Long. (o) | -20.515 | Alt. (m) | Depth (m) | 55 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022909 | Metagenome / Metatranscriptome | 212 | Y |
| F029485 | Metagenome / Metatranscriptome | 188 | Y |
| F034245 | Metagenome / Metatranscriptome | 175 | N |
| F089156 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209404_1000070113 | F029485 | GAG | MQLQQVHQMDSYWEWNKENFPWHYDPSSKEKDVQYVGRFTCNNFDDIIKTAVSRFKPGDEYDEVSIKGEPYNDEAKEIMEGYHNDLTRAGFNQHNTGGRQTRDNLPRQLVSMGQKSGLWNPQIMFLEQPPGKFIPWHRDSYNNYRRNFAKVSDTTEVIRYLVQLNDWQWGHYVSVGNDVIHQYSIGDIHCWPEGIYHCTGNAGLWPRYCLTITGCVTESALHLKDPKEIKIP |
| Ga0209404_1000070131 | F022909 | GGA | MDDTTNTEILRTFFKGEIGCIEYTDKWLPQLEEFCSIAKDLGYVSNESPEAMKVDEIQYHCMIHIPTNKIYAVAGVQYMPEYKEGYYRIWTRLCRIPNEDIPMTRTRRYGRGEMQEFDGLLYFNCDWATKQDNFKATFGTTLANKAYADSYVRSTNTITDYVARNWWRRKGIAEPEGITEFYAVPQVVWRMHFDKFKEL |
| Ga0209404_1000070134 | F034245 | AGG | MRGVTFSEFKDGQNVDMFYNAPDCKPGTPMQEAIRTAKEIRQKYNKDIYIWCDYSVQHMYSQLCMQAFKMAGIEFVAAIPVLSNNLTKRENDCSIAYCEQRNIPYELFHIDVEELFNGPELEKYGEKFPTTQPQMTIVGKYFDILPKCCLVYPGFMAHVSNSDWTRTKNNGFMPFVPHQTQEHAAEVSGLEYTNFQEHYVNMYTSWMFTQSYGEVLKSATKDFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDSELRQRLSQFGPLLLKYASLQYTVKVDTRLKEMLETHYETSFEFINKLF |
| Ga0209404_1000070135 | F089156 | N/A | MLIIQFTEQIDPSTLPVEVIQSFKYNTYLVDCEISEYDVISSITSQYPISSMQSNEDCAYIDVYERLTTSYTTVYAEDTLAPLLEKLDFLEALKPQILCFSWQMDRNYIVDYRIEKLIEAGNMVVCAGGNQDLPVHDISPVAVDGTIKVGGNLHDGHHQNWIDIYDVTVPNEPNSNKAVHTVCGLMANKELELDYTLGYYSDSSVRSAPWPLRLAQTPSNETKFYEFNPISNLRYCAGEHLIPVRPGDQVSMLYGGIELEDFVGYQYVECNTDLPRGITFDLESGWLYGTFKFKTNMFHRFQVDINGQLFEYHMISCDADNKLTYEDVKEKYFNRPYDSPPFTMREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRGYE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |