NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10076495

Scaffold Ga0209415_10076495


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10076495 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039693Metagenome / Metatranscriptome163Y
F059907Metagenome / Metatranscriptome133Y
F070032Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209415_100764953F059907AGGAVRAWEIWTGPVFGPHPVLLVSAQARIDRKQALVVLKGVTMRPGQPFKVDALQATLDQEDGLETQTRFDCDLLYTLEKKDLSQRRGEVVSLERRRDIARKITQGLAIAGL
Ga0209415_100764954F070032AGGMKSVNYPLALPLDFLAEFKQAAKEAGLSTAATIRQSAKLGLPKFREQISSSRVTNVAPLPDKVARKLYAEREEDMGSIRRFIAAQPKDAQ
Ga0209415_100764955F039693N/AMSRLSTLLLSGPAPPDAVAVWFGDLPLDAPLECCYGPSNHPRAMGLWFPKLAANAKLQIIVGPAPASPCMGIWRGTVLDWPGSVFMVGAPPKPGFGGCWVQPGEVPAELEAMFGLPEGGHPGIWFRGRRARPGVWR
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