| Basic Information | |
|---|---|
| Taxon OID | 3300027905 Open in IMG/M |
| Scaffold ID | Ga0209415_10011104 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15217 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (73.91%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005983 | Metagenome / Metatranscriptome | 384 | Y |
| F006433 | Metagenome / Metatranscriptome | 373 | Y |
| F007657 | Metagenome / Metatranscriptome | 347 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209415_1001110417 | F007657 | GAG | MNWVTFEVVEGGLVAVPPHHVVAIYDELGAVKLATTAGGVHILKDMTVQRATALVSRAADADATRSS |
| Ga0209415_1001110418 | F005983 | GGAG | MQADAKDDGLITYDFEEFCDDYGHPAGRLFTFEVTHHAVTYIYADVIGTVRGSEVVFCLNADDLVLTRKAH |
| Ga0209415_1001110421 | F006433 | N/A | MAETTYRILHREDDSFAVEVVRTGVLPQTAIGFATESDAQGWIAQDKRLWDAVDPFRTQASRKWRGF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |