NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209415_10006478

Scaffold Ga0209415_10006478


Overview

Basic Information
Taxon OID3300027905 Open in IMG/M
Scaffold IDGa0209415_10006478 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20771
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000426Metagenome / Metatranscriptome1154Y
F000534Metagenome / Metatranscriptome1044Y
F001318Metagenome / Metatranscriptome724Y

Sequences

Protein IDFamilyRBSSequence
Ga0209415_1000647821F001318GGAGGMKRGPLLLVVLAMISLVAVGQNSATLTASSSQGGWHEAGPQDRMFFPRDMLWGWAQLDLAPPHNEIDPNLCAADAGMLVPPSCSLFARYMLSGILELRPFGRGPLRRLMLYGAPTFLFGKNLPKTLYTWSPDAIGIEHSWGAGIYIAKGFEFRVTQHFLFDRLGARATNLGPADLGNNGPWGRYMTVGVRKTFGTRRW
Ga0209415_1000647822F000534AGCAGMPQEISVSYQAIKSKVYRLVDSLVIGEKSEADVQESIRRWWDLIHPADRAIAQKYLLMVLGRSVSALDAVGDGLFSVSSSAPQQWRTTAPHLPSHRMRLMERVVKESGIQTAM
Ga0209415_100064783F000426AGCAGGMKDIHEVLRHKQAKYAQLGKQIEMLQQAAEKLREVAPLLAENDDEDNAVLAEVEDGSRGDAMSAKAGAGSGSSTSKAARPTAPRWP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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