| Basic Information | |
|---|---|
| Taxon OID | 3300027905 Open in IMG/M |
| Scaffold ID | Ga0209415_10002860 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32294 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (62.86%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany: Weissenstadt | |||||||
| Coordinates | Lat. (o) | 50.13 | Long. (o) | 11.88 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000536 | Metagenome / Metatranscriptome | 1044 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000885 | Metagenome / Metatranscriptome | 849 | Y |
| F001619 | Metagenome / Metatranscriptome | 662 | Y |
| F006125 | Metagenome / Metatranscriptome | 381 | Y |
| F085961 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209415_1000286016 | F000885 | GGAG | MAINSPIASNSHLEFIGMIVEIAGVASAVAGVVLSLHHWPAAVALIGGGVAYVIGKKLRA |
| Ga0209415_1000286018 | F001619 | N/A | MLDWLRKLIQIKYVGLLEADVARLRAENRALMNSLLGTAGYPPVEFPEAPKPQALPRLRKRSWHQIQAWRETGAARDAADSAEFVGAGKSSSPVPHS |
| Ga0209415_100028602 | F000536 | GGA | MVEFTPQQVQILERLLAAGFRPIAIPPYETGLCMRRGGCAAVLSPIPNGGLKVLAPPSYLVEGNLSVRLKRGTGEVFVWKKIELPATPERLQELETFRRQLNELLAEGSLNN |
| Ga0209415_1000286027 | F000739 | GGTGG | MKRFELWLKGVLAAAISGGAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINAVIGVAAYLQKSPLPDD |
| Ga0209415_1000286028 | F000696 | GGA | MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGIYFIGATQDTQIRLRYAKAYPDFTDATSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDEAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF |
| Ga0209415_1000286029 | F006125 | GAGG | MSIAITLLPSNEDGSGSNLFYAIGSLTFSGNYPTGGDTMDFTTVADKLPSAQIIQVFADSQNGNAGYYVPVQGSALNNWKLKAFTGGGTELSAGAYPGSVTGDIVQITITARKLL |
| Ga0209415_100028605 | F085961 | GGAGG | MTTRSTQPPWEFLLSASRNSLQSYELSRLSHAANLRKEISALLDQWLEENAAAMLARLLLQQRERSPRTSEPFSEAESGCNGAHSVSDNLFSDRAPSQAVNRGPS |
| Ga0209415_100028608 | F000188 | GGAGG | MGVKPELAFDVCWEVYRGAREVLESKRGISALNWKDTGKFLWRPDFRPRLNEWVADFALAGQSALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSEHSWVNWTEEVRRRCGKEFLRRGMFPPRRYFREAA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |