Scaffold Ga0209777

Basic Information
Taxon OID	3300027896 Open in IMG/M
Scaffold ID	Ga0209777_10037159 Open in IMG/M
Source Dataset Name	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209777_10037159 Open in IMG/M

Source Dataset Name

Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4543
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4543

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment → Freshwater Lake Sediment Microbial Communities From The University Of Notre Dame, Usa, Of Lakes That Contribute To Methane Emissions

Source Dataset Sampling Location
Location Name	University of Notre Dame, Indiana, USA
Coordinates	Lat. (^o)	41.7	Long. (^o)	-86.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

University of Notre Dame, Indiana, USA

Coordinates

Lat. (^o)

41.7

Long. (^o)

-86.23

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F003807	Metagenome	467	Y
F011761	Metagenome / Metatranscriptome	287	Y
F028717	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209777_100371591	F028717	N/A	IILGGNESALAQGQGQANPGDSAEQQINAGAIRKSTTSSILNALSNASGQNFESVEAALSFIARTTAQQNQTVGNVQPVEEPIQQRTGRVTTNDLHEQFSKLQSDLARKDQALREKELDGDIQRSMGDRFDPDLLDYALSKVKSNIQWNSDGTYSIINNKGQERYGMDGSPLTIQGLVQEVAQGNPKLLKQSNLPSGSGLRPGQGGFAGAPHETMPDYAKDPAAFNQWAVKNGLGRNVGLKIMQVSATNSLASQKIL
Ga0209777_100371592	F011761	AGGAG	MAYVLGGSDGENYGFTFAIANFALRAMHESMGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAGGPTAPWNTGNAAVQNPALSQTSILASPAVATTAFDIFYGWTTSFQLAATLGAELGDSFAEKVDQRVTQAFADTTNSYTDGTATPVNTTTGFKPTPGNTFYPQSADGFYRVLRLGALELLPAGATTGYTFTSGFTTNSVLELIRFAKQQFKVARMAGSPVIVLDSNGFVTEADVAPGGSGSSLTRLLSELTGGAVSGPSSGGSNLSALGNELLASGKIENIYGCMVMFTTFLQHASRTIAGNATTPCLVGAYFGDSALFTVMKEGLQIKLGEVPGGLQNWLTGVGYFGSGVGDQRRGGAINIVQDA
Ga0209777_100371593	F002260	AGGA	MSVPYQRISNATVEDIRFYDPAAYRRAEALHIDWAPYFKVGSQEWLYKLEFGWWNKYCDTVLGAYYYSNLPNGALISSFNPSLLIKSDQTLIRLDVFGAVMVFYESLVTEVSNMNDVDRQNYDFAKDRCDREWIKALELMNFYNLYGNSPNGPTTKLEENWTADVDYFNGDRRFF
Ga0209777_100371596	F003807	AGGA	MNDLNSVWLKTNEEKLRSLLGDEAKQLPMLANMEATIKQMKAKQAFRIALLNQLLEEADPGNSD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209777_10037159

Overview

Ecosystem & Geography

Associated Families

Sequences