| Basic Information | |
|---|---|
| Taxon OID | 3300027895 Open in IMG/M |
| Scaffold ID | Ga0209624_10000318 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 42689 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (90.38%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Algoma, Ontario, Canada | |||||||
| Coordinates | Lat. (o) | 46.42 | Long. (o) | -83.37 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000419 | Metagenome / Metatranscriptome | 1160 | Y |
| F001010 | Metagenome / Metatranscriptome | 807 | Y |
| F002004 | Metagenome / Metatranscriptome | 605 | Y |
| F002288 | Metagenome / Metatranscriptome | 574 | Y |
| F002929 | Metagenome / Metatranscriptome | 520 | Y |
| F004032 | Metagenome / Metatranscriptome | 456 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209624_1000031834 | F002004 | GAG | MRKTPNSSRRLDEHISRALNKIKKPSTAEEITELLNRDLEPEDRPFQTKEVAEWLRNTGDTALTLYWSRARPRR |
| Ga0209624_1000031835 | F001010 | AGGA | MQNTGDPRVRGEIVAIIEHVLSDRPGEWRVSIVGSHANDNWELKVEGPEGFERSYTLVGGSGEHEPAAIGNLVVKLLPARKP |
| Ga0209624_1000031839 | F002288 | GGA | MGEGDGVHKRRMFRWPKEARELVREYKERISRSQEHNETGRRMLVTKLAAISGNPRDACLRFLRELGVHQKRPYREWTKPEQQRLLDLIITMPVEEAAKILRRPAGSVRSRLHRLGIGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKSRSLTTAGTKANIIHPDDFCQFVKEHGRAVASRRLSYDALWFVQNYVFPPSHAELLSVRGTYKRHDPDDATDPNTESESASGSEESGGQEG |
| Ga0209624_1000031845 | F000419 | GGGGG | MAINSVRTRDGSDDSIRFQPMERLKLYLFGATVLFASFGMGEAVYRLLFSEFDGITDRIPIEVLFGLVFAWLATKFGGGVYRNRKERSARLNFIWARNHQIRGALEGITPLAHPSKNQQSIRVIREEVERIEWALKEILPG |
| Ga0209624_1000031850 | F004032 | AGGGGG | MNTGSSKSLDSGVWRDLYKAALFEVDSARLPERIAQAEEALVVRARELFHIAGDNIEEEQALDDTMYALRALRNTSQTSNRTPHRSEAA |
| Ga0209624_1000031851 | F002929 | AGG | MSQSFRAVKEIWNAHSSCFIEPEKLMVLLHDLAARVDTASDEHEYGDNQVVWLENGRKVLDYMEADERFSPASFKDSMEEQGIAVNQNNLIALIDNMRSLSKQWRSSIGKHGELVFYIDACLTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |