| Basic Information | |
|---|---|
| Taxon OID | 3300027867 Open in IMG/M |
| Scaffold ID | Ga0209167_10000007 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 380855 |
| Total Scaffold Genes | 308 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 242 (78.57%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000042 | Metagenome / Metatranscriptome | 3762 | Y |
| F002813 | Metagenome / Metatranscriptome | 528 | Y |
| F004373 | Metagenome / Metatranscriptome | 441 | Y |
| F008143 | Metagenome / Metatranscriptome | 338 | Y |
| F019446 | Metagenome / Metatranscriptome | 229 | Y |
| F020136 | Metagenome / Metatranscriptome | 225 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209167_10000007192 | F019446 | GAGG | VLGKERSPNWSRSRSNERQFDFRKYGTTVTDAENQFLENMPDEIKEVLRWHADSQSRGRASQTIADFAGRFLGGMYEDGAVLPTNLSASAPEVLALVLLQHRTSARSTAAWLNLGFALRRVALYRTQDAEETNRARLQSAIQVFGRAIQLDPDNTGKNIRAWTGMSFAYHMLAMYEKELECCGKALESDRSDPKLWLKYSFALKSAGRDDEALSTMNDAYDAYIRAGRPEELREVFADVQSATQRRCRERMAQ |
| Ga0209167_10000007193 | F008143 | GAGG | MKSVSGIHRTRLAASKVHRHLVKEARRTVQKLGWQVPEHGISPTLVGAIPLPFPVPDSFEAAFGYRGNLRFVQFGYVAGSRQFGYSDGGDDLPSDASLWSWFLHHPVIAPHLPETLYPTLYGTFPSGSERPSLEQIMRRGADLPTCHCLLLDTRDRRAYVAERDQAMILFALMEPEEGDAHNVFVDGMLISSGSEDYKEPPPPWLLEQIRRFLDGQVVGSQGA |
| Ga0209167_10000007214 | F000042 | AGGA | MKNIKFVVKVNRGGTRVPQYVQRVDPTPIQMTTNRKLALVMGKFTAEDAVKSLQNSRCIPELESVQVNASIRVV |
| Ga0209167_10000007258 | F020136 | GAGG | VKNIRAIALIFFAVATWLAHAQDRPTSLSEARAAIDANLKTPEGKDFDERLGKDFFEKHMGPLRQCRQSAGNDLDSFWILLKLDKDGAAREVLLYPTTKLGTCAHEALLKDRFLAPPRPGYWVSVYLKISH |
| Ga0209167_10000007300 | F004373 | GAG | MSAYIQQMLDGDRTSLDLAVGPKTPGFTAIGVFLFFGAIMATLAATTLQWRGTDLDRLWTLNPTAYNQLAPLGRIVGILFSVLGAALTTAAIGWFRRRLWGWRLAVVIISTQVLGEIVNCVRGDWLRGGTGVIIAGALLLFLLQPRIRAAFV |
| Ga0209167_1000000742 | F002813 | GAGG | MDHLEVLREKVARLRAEIGQIQRLNEEYRLQKPAAAEAQVAHGQRHERLQAIQQELAQVHDLGRRVVSVAQMKGKIRSQLHPDEQARAS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |