| Basic Information | |
|---|---|
| Taxon OID | 3300027857 Open in IMG/M |
| Scaffold ID | Ga0209166_10000047 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 164946 |
| Total Scaffold Genes | 162 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 111 (68.52%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000624 | Metagenome / Metatranscriptome | 977 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000703 | Metagenome / Metatranscriptome | 928 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000775 | Metagenome / Metatranscriptome | 896 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| F034250 | Metagenome / Metatranscriptome | 175 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209166_1000004710 | F000739 | AGG | MNLIRLEIWLRGILAAGVSGGAGGVLTGFAAVGIDPQHFNLQAGIGATLRIAAAAALINAVIGVAAYLQKSPLPND |
| Ga0209166_1000004711 | F000696 | AGGA | MPVVGSSAYNSAGQITALVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVPAVAQTDTSLQVSITDATAPPNQLPTDLLVPIKIWERPNGSTDDFLEMVDLTQHGGLPSRVQDVTLSVWEWRADGLYFLGATQDTQIRLRYAKAYPDFTDATSPVLIRNGQEAIAYATAALAAWSRGSPLAEKWDEAAVDAIEDLVAQAVRREQQSARRRRPFSARSGYTPF |
| Ga0209166_1000004719 | F006229 | AGGAGG | MLSAAATKESDSVALVNISTETWPPRYRSYFGSLQVVSPQPGEPFAITPIRGFTSIIDFGDKRTMDIHVSAREVAEDVAREINGDSGDGSFHGVFVAAGPAPTDAEIADARQRLVAFHQKLVASADLEWERTHNHMFITDLERRAARQLGLEKPWLYDARPQADCPVCAEKIKPGVAVCKSCGAILDREKAAQYGLGLPPAPHRARRDRHVASTEISGVGKQPLDSGKQPDAANDSEPANQTEAGK |
| Ga0209166_1000004726 | F000781 | GAG | MLTVSQLAPIKDRDPYLYETLTKIVASVNATSQRAGVDPATPAPAPAPIASINVQASNGWFDISVTDPSDARPGLFYFAESDVTPAFSAPRVYFMGASRNLYLQLGNQTLFWRAYSQYIGSLPSSPVTFGSPPTAVTGGGSSGPAPQPSTGSGVLPNGQLRGGNGFGINPGSRITRQTIL |
| Ga0209166_1000004727 | F000703 | GAG | MLIREYRESDLAALHALHAAQGFDYAFPDLRNPLFVTKLVLTNPSHHDRSGTTGSQDVRAGKCDVQPDSSLSPIVGAALLRLTAEAYLLLDPRAGTPRQRWQWLMALHAAAERDAWQRGLEDVHAWLPPSIAKKFGRRITQLGWRRDDAWTPYCKRL |
| Ga0209166_1000004734 | F000624 | N/A | MPIHWYAILTALATAGVQLVVFLRWLHRRMRDDEINRAFVRDVATNHLPHIYSALRQIAAEQGIELEDPPLVRFVDLRRHSGHHRRG |
| Ga0209166_1000004742 | F034250 | N/A | MPEGEAIDLKASTQFVSAHGALIVMDAPLLPGQTVRLFNEMTEDSVECFVTSVREKHERRLVGVGFAQPSHDFWHVVFPKAGTRQAVRSSQTGSLVQPSKSPELPPRT |
| Ga0209166_1000004748 | F000775 | GGAGG | MKSLDSVFAAYIIGWAVYFVFYVSVAKRTLSLREEIERLKSSLHREK |
| Ga0209166_100000478 | F000512 | N/A | MIRVLRETHDTPTNVAQRLRNAGGINRFGEPNYRAIWGWNRLAWIGGKFEERDPATGSLLREVVELRQEPKYPQVNRWHIERWVPPEAYSSPRAWYAQTIERENGVSIPALGPYPSRGEYEHCFTLEGPRGEFIQLTPTAAEHIARAIEFSRCAPCARSRRSLYEREARQDRAYDAWAYDTLDDAAPAFHKQPFVTVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |