NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10006459

Scaffold Ga0209580_10006459


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10006459 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5016
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014566Metagenome / Metatranscriptome262Y
F075370Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_100064595F075370N/AVKISELVLTVVGMGLEAVLCLLLIVRRYYRDFPIFSAYITLSLVATIILWSLINNARYYSVIYWTYDALGIGLIFLALNEALRSVFRNFLGMRWFRWLFPGIGIVMVSVAILRIILLPRPAFSLFTTSILGLEIAVGFLQFGIFSLFIVLMRLFHLRWGQHAAGIVFGFGISAAGSLVAFLLRSEFGKKFDPVVRIAPPIAYIIGVAIWLATFLKAESGRPEAAWAAKLTPEQMIFELKRHTKTVKGILGR
Ga0209580_100064596F014566AGGMMFDIITIFLVGITLLFAIYTAIQFRGKHPKRTIEDVTPFLRPAEHDELESLLDPAQETNFRIRMSPQEFDDWQRRRIHLLREYLLRMSHNALVLIEWGNMEALAEGNEAEIVRQRQALAQELVAAATEFRLYSVLALAKLKLWLIMPAPFSLLFPSPSLPSMRHVFGIDALSSYQRLRIAAGGLSLAHSQHFHRELLERL
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