| Basic Information | |
|---|---|
| Taxon OID | 3300027842 Open in IMG/M |
| Scaffold ID | Ga0209580_10000045 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 138351 |
| Total Scaffold Genes | 137 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 109 (79.56%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006167 | Metagenome / Metatranscriptome | 380 | Y |
| F016718 | Metagenome / Metatranscriptome | 245 | Y |
| F047205 | Metagenome / Metatranscriptome | 150 | Y |
| F062002 | Metagenome / Metatranscriptome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209580_10000045102 | F006167 | N/A | MKKSLPKSDGSSFLLCEDVREEVNNKISIIGVFRNDDIVLQENILVPSLMAVLFARGGEGSCETRVSLTDPKGETVIESPKQTVVLEKDAVHLAAVRVLAPHLMVGQYTIKFFFDDVPIQRTFEVKKA |
| Ga0209580_10000045122 | F016718 | GGAGG | MPLSEYDTKEALRDATDWLVASELPGSAAACEGIADTIPLVMMGVIELDDLDDLAAIVEEHGRAVHDAAVPEDVQHAQLKEAVKAAFDYVRSLRRDAAR |
| Ga0209580_1000004529 | F047205 | GGAG | MKKMKKHTGKDATAAYSPKKGHSVIIYTHKFKPEHFREGVEIVTNQFPDAQSKIGQKRHNIFISRPSTHEMVNISFFDEGAGVDDWHQSEGRLKTVKRLQDMLEKPIDVQVFDVLSVVGISE |
| Ga0209580_1000004596 | F062002 | GAGG | MSTRRDLFRAMTREAVQASAGAALILGGFLLLSAP |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |