NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10091693

Scaffold Ga0209089_10091693


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10091693 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1886
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068714Metagenome124N
F070560Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100916931F070560N/AKQIENYKYYKHYLQNIMLMTQTQQFKQLVSNAKPEAQIPKAEIMVTVTSLMTTADQVQFSKGLSSIFVDVPHHTSGESQIFSVRPQQLVPRSAVIQRDETSQLVGISAVSGG
Ga0209089_100916932F068714N/AMKILETNKSHIIYKEDNGIVSIVPNTPYFNMKVLENKNERIKFDLPIEGIEILETFNGMIFNISLNGQTITTRPNMADAVVESFSDTDKIYKIFDDYNNNKYNLKLLNGVLEKYGDRIKTRPDGFVIDDIFLVDRTGVCWLWDNENNCRNKNHRTNLGSGAICIVVNKTQRLKLNTKDGLIEIDEMGYIILSKIEFLMQPNLNDTVFMHQIPKKVKTILERNKKLQK
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