NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209230_10040531

Scaffold Ga0209230_10040531


Overview

Basic Information
Taxon OID3300027836 Open in IMG/M
Scaffold IDGa0209230_10040531 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2393
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018716Metagenome / Metatranscriptome233Y
F019762Metagenome / Metatranscriptome228Y
F024559Metagenome / Metatranscriptome205Y
F025277Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209230_100405311F025277N/AVKGKVVINGLDLEERLKTIEKVLMIPERDAIMEAKYPSLKKKHDEYINLLGKYRTFEAIKGDNNGTT
Ga0209230_100405312F019762AGGAGMELHESVKHTKIEAVIKESEGFRVRMEKHEVLSPRGLFSINLINETLDEDGIVKDSSTYNYFMTKEELQRLSHALSL
Ga0209230_100405314F024559GGAGGMIKNILKLILGISLILAVIVFGPLLGIWSLNTLFPVLAIPYTWQTWVAFGLLFGGLSGARVSRTSK
Ga0209230_100405316F018716N/AMNFECYNVHQLANIVTVEWENQNGFWWNETCAIVLEVFGLPGDRYSSHPEQGAMFFIFKNKKDADLCKILLSERL
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