NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209230_10002439

Scaffold Ga0209230_10002439


Overview

Basic Information
Taxon OID3300027836 Open in IMG/M
Scaffold IDGa0209230_10002439 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7621
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001957Metagenome / Metatranscriptome611Y
F019762Metagenome / Metatranscriptome228Y
F093229Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209230_1000243912F001957AGGCGGMNSVDMATNLINRAKNLQEFVVTTDVPENFRFDGVIPFDMEIKEGEISAKVFAVDFDEAVHRFNDWLETCK
Ga0209230_1000243916F019762AGGAMKQLHESVRNTLVEAVIKESEGFRVRMEKHEVLSPKGLFSIDLINETIDKDGKVADTSTYNYFMTKDELQQLAFALTA
Ga0209230_100024399F093229GAGMKAQSPAEGVLLRKDYGDAKIYNIVCECGDCDHSHEVWVEAEDHGITVTIYTQQKTKWWQQNRWKIIWTLLTRGYVERESVLIMSKQQALNYANVLQLAVKDVEEFRKVKNVKN
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