| Basic Information | |
|---|---|
| Taxon OID | 3300027836 Open in IMG/M |
| Scaffold ID | Ga0209230_10000167 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23862 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 40 (72.73%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Lake Ontario | |||||||
| Coordinates | Lat. (o) | 43.933506 | Long. (o) | -78.003845 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F001043 | Metagenome / Metatranscriptome | 794 | Y |
| F001507 | Metagenome / Metatranscriptome | 681 | Y |
| F004840 | Metagenome / Metatranscriptome | 421 | Y |
| F005531 | Metagenome / Metatranscriptome | 397 | Y |
| F045756 | Metagenome | 152 | Y |
| F074872 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209230_1000016721 | F005531 | GGAG | MIINYSLWQGAQLLSVNNKASKPEDILAVMEELSKLGKGFSFIVREVNTNE |
| Ga0209230_1000016723 | F045756 | AGG | MNKYTVTVSYVCEAESELSAVFALQKSLHPLSENELEKFNAIKVEENK |
| Ga0209230_1000016729 | F004840 | AGGA | MYKLTSAYDSNPPHWSAEYENEFGAWENFFLFTDWGFADEYRTVNLYTPTGKCHTRIFYREGRKVVTK |
| Ga0209230_1000016735 | F074872 | N/A | MSDPNVILSTYTERRKQMTLQDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTTVSAEALTS |
| Ga0209230_1000016741 | F000311 | AGAAGG | MYFELTAPSQVAFARATWEAEMIGLDPQTIAPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTEIYNRR |
| Ga0209230_1000016742 | F001043 | N/A | LKVIHQTTNQQKFTIGDNMSDYKDGFEDGYKFAREEMMEKLSEIDIADIDSWILDRLSEMIEGGTL |
| Ga0209230_1000016747 | F001507 | AGGCGG | MDTKPYAIHELVTAIYEDNYSHFEFMENMNGGDCDCNLHQTMNVIAAYQEGLVDGPWGDY |
| Ga0209230_1000016752 | F000263 | AGGAG | MNSEDIGLPPHLQRMVNAGVNGLDIMHGELKNLLLIAEQELVEAQAVEDLSEEAMDSMDRTRCEGYLDALVNLYNLTYQLSFAIGEKQ |
| Ga0209230_1000016754 | F000852 | AGGAG | MTTKREYLKQQGITVGVRGRFSGAAKVALAEAESKGIKFTAEAPVKKAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |