| Basic Information | |
|---|---|
| Taxon OID | 3300027836 Open in IMG/M |
| Scaffold ID | Ga0209230_10000033 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 50372 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (6.15%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Lake Ontario | |||||||
| Coordinates | Lat. (o) | 43.933506 | Long. (o) | -78.003845 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023852 | Metagenome / Metatranscriptome | 208 | Y |
| F026560 | Metagenome / Metatranscriptome | 197 | Y |
| F070154 | Metagenome / Metatranscriptome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209230_1000003312 | F026560 | N/A | MIVIANNMKEACQYLEEKKARNRANRMSLIVAHGECAKFNSDDYKQVKTKMKSSYGAKACVFSKTRLWNHNNLSLTEIKTKY |
| Ga0209230_1000003316 | F023852 | N/A | MTKEQLAFQEALAFEVWMRDTVKTVHYADNDKMAKAYDRVFNNSLEIKVYENIKTKRA |
| Ga0209230_1000003333 | F070154 | N/A | MISFKYSTRLVIILKNIVIKIPINRRGYLQGLNEKYIWDKYKDITSLAELKWMYLGIVCQKRYDTELLTIPNIVIRRIKSRVSEFDFSDCDLHNSANWGMEGKKYILLDYGINKDIASLY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |