| Basic Information | |
|---|---|
| Taxon OID | 3300027833 Open in IMG/M |
| Scaffold ID | Ga0209092_10000236 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52786 |
| Total Scaffold Genes | 78 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (12.82%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Fram Strait | |||||||
| Coordinates | Lat. (o) | 69.2303 | Long. (o) | 7.7302 | Alt. (m) | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008563 | Metagenome / Metatranscriptome | 331 | Y |
| F014036 | Metagenome / Metatranscriptome | 266 | Y |
| F026041 | Metagenome / Metatranscriptome | 199 | Y |
| F038691 | Metagenome / Metatranscriptome | 165 | Y |
| F059026 | Metagenome / Metatranscriptome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209092_1000023634 | F038691 | AGTAG | MGFHKRYIDNEQVVRLYEGGGIVRIRDWYTRGVDALITETGLASQVGSILSDDDWRQFGTVRQDEEIIKIIQQHLGVNEIKK |
| Ga0209092_1000023635 | F059026 | N/A | MEHIKDYKLFKESLDIELITERFSSDILRQFAAQDGGSRWRDGVAKDMQKFASLALDQISDADFTTTSPEAYWKGGDAKNPNKVGFFVDDDPGFIKWAKANKKYMPGNLSLGNISKYGVVLSVIRGGIGMYHGFSMDRGRTYSRHRKGTEERYGLLAKEYETRSMYNGWDGAPAPKVTRKNLIDAATRVYVLDLDSLRDKYDVSGLKSDRAISKMGAVALKSAKDIREENRKRYNAILTDKAAMTDIDKAVKDSIELLNSHIRTALAAGTMDKFGNLVIGEDPRGRSLKITDGADYMKRLLDDYQRYKDYERQDKEARAEGRGDNYYAREVKNYAKQLQDRAKAVKAKNYAW |
| Ga0209092_1000023652 | F026041 | N/A | MIEIVKEKPIKSSTSVEGILVQVTGGQWYGITLFRPARNPWMGRCGKSTTTGRMDFSPDAELFQTRFGTKPENYDGLKTMLIGVLNGAEPIKHKINYK |
| Ga0209092_1000023653 | F014036 | GGA | MEMFACLFIIGLSFVFHCVVWEDDYVKKWYWKVLIGGGILALTFAAIMGY |
| Ga0209092_1000023657 | F008563 | N/A | MAKIKLESHMGIAFSTIGGQKYLFPGWIPVEDHISFDDVEVTNPYANQKSDTYTITGSRGDKYTVTNRNGKFSCDCPAGKFRGSCKHSTQVQKELSLVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |