| Basic Information | |
|---|---|
| Taxon OID | 3300027832 Open in IMG/M |
| Scaffold ID | Ga0209491_10017322 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7871 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Bonney | |||||||
| Coordinates | Lat. (o) | -77.714 | Long. (o) | 162.445 | Alt. (m) | Depth (m) | 83 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000291 | Metagenome / Metatranscriptome | 1361 | Y |
| F000836 | Metagenome / Metatranscriptome | 868 | Y |
| F009238 | Metagenome / Metatranscriptome | 321 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209491_1001732213 | F000291 | GGCGG | VVCVCVLVYARTHKQTTWVLDVSPGVGQTPGEPEESRSTKAYYTCRPYRCTQYICLYICCAAGFDDLG |
| Ga0209491_1001732214 | F000836 | GGA | MYVYVFMYICVYVCIYMYIRARVGVHMHSCRRILFTCTVQSLYYMRVYHRCFLTFACVRVGGFELGFVSTCSWLALVTGVGGYVLAGVEIGVLSCIFFYFGGC |
| Ga0209491_100173222 | F009238 | GAGG | VMEVSPHFLQGVDVYVLCVCVYAHTRTLHVGYSDVSPGVGTRHLESPEEIQMYCSDSIHIYRAVYEVHMYIYMLGYR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |