NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209491_10016610

Scaffold Ga0209491_10016610


Overview

Basic Information
Taxon OID3300027832 Open in IMG/M
Scaffold IDGa0209491_10016610 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8081
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Bonney
CoordinatesLat. (o)-77.714Long. (o)162.445Alt. (m)Depth (m)83
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006069Metagenome / Metatranscriptome382Y
F024033Metagenome / Metatranscriptome207Y
F062908Metagenome / Metatranscriptome130Y
F071403Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209491_100166103F062908N/AMDISNTHQNLFGVIDRTYMTHAKPIQKGVMSMNYTGLIHARSNANYPHQKYNQLDIATHIGCIGKANSQRSDLPTPLIKCKPRHNEAASRFNYAYDSQITTKPTEISGVNIPNNQLRIIPNRGTQLCYQKTIMPINQEIMNLSRNIIGVCGERADTLANENLQFKASRQRLTRDELQGLAKIPAPAVP
Ga0209491_100166106F006069N/AMIIEKKLKGFDNKLLYDKLNYPQCSCGLCPKFFFNSLHVGARGSRKTYTVVQMIKHYEKHKITREGVGYKLRTHLISPTIQANEIYQSLDSLDMEKDAHDNYGDQLLLDIIEDIKAEKAEYEKFLLYKKSFEIFMKTPESKYEKLYDSDPEIFHLLEEYDYIHPRDFKHEQPKVNIIILDDLLGSNAFTRKTQSVLTNAMIKNRHMQIVFCVLVQSIRAVPKTIRMNCSVFQLAKFGSKKVVLNDIYEEVSNVTTIEKFEELYDFATSKKYGSLIIDTTNGKRFLSNFNSELFITDDKIK
Ga0209491_100166107F024033N/AMDDIEKDILLRQAQILYPDCEPWVMDLAMEAYFNSLKSPVVEETMVEEN
Ga0209491_100166109F071403N/AMEIHKTRTITSFISSANRQSQEHAYNFTIDYPDGILSCRQNEYMEFNVLSFDMPNTMYNINSKNNEFDIITPDDTVRKTIPEGNYSIKTFMTQLKTLMGNNLITIVYNDAQNTYTFAKSFELTETYKIKPISIGKLIGVSDNLEYEISTSGYTTGLINLINYNKVMIRTENVAYYYSNVENIRTNNNSVFNSNIIFWKSKADTEPFKILKYNNEDGGNSFVYKVENRQINSIIFQLRNERNEIITDAPDYMMVIQYNFYEKRDIINILVSIDNIIKEMYNTILFAINRLKLLL

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