NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209773_10055577

Scaffold Ga0209773_10055577


Overview

Basic Information
Taxon OID3300027829 Open in IMG/M
Scaffold IDGa0209773_10055577 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1603
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000269Metagenome / Metatranscriptome1410Y
F000323Metagenome / Metatranscriptome1300Y

Sequences

Protein IDFamilyRBSSequence
Ga0209773_100555772F000269N/AMKILRGPLGTRALAFSLVLLLASLGSASEPTGPRPTDVPATVIAHLPLPQSTGNQMLLQKENGKQYLYVQQATKQGFMIVDVSKPERPSLLKRTAESNQSTAGNLQMVSPDVAIAVAPEKTPTTLTSSSHPTETVRVLDLSDPRNPKTLETFNKVTSILPDGGHGLIYLTNNEGLWILRYNRPAPLEPAKKKPPCDSESEIMAMPPDCN
Ga0209773_100555773F000323AGGAGGMKKLFFALLLSSSFLLAQDSNTMSQGTSKDSKGSVTIQGCVSRASGDYILMKQDPAVTYELQAANKIKLHRYLGQQVEVTGTKSPSLETSSDAATRTSPSPVTLTITSIKTIAKECSAR
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