NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209060_10000295

Scaffold Ga0209060_10000295


Overview

Basic Information
Taxon OID3300027826 Open in IMG/M
Scaffold IDGa0209060_10000295 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106786
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (76.60%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001564Metagenome / Metatranscriptome670Y
F011110Metagenome / Metatranscriptome295Y
F078487Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209060_1000029542F001564N/ALCPDAPDGGRCDHCPQDQLDSAQTSEAGLLIRRALDLRAALNLGIHIGLDDIRADEFYAMLILDDERDQLDRERTGTHGK
Ga0209060_1000029545F011110GGAGMTEFVYMRAPWGGAEVRRVEATPEVLSPLMISGWTQCDPPANAEEVTTHVHD
Ga0209060_1000029548F078487N/AMAAWSQQSGLANAAILAAFGQPVSYQQGAVDPFTVIGILDRRTDEQRHPDTVYARLFVALSSFSVPPNHGDEVTVDGELYTVFEVLNDPAGGCWLSIREKL
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