NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209039_10010568

Scaffold Ga0209039_10010568


Overview

Basic Information
Taxon OID3300027825 Open in IMG/M
Scaffold IDGa0209039_10010568 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5385
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003703Metagenome / Metatranscriptome473Y
F056445Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209039_100105682F056445AGGAGLGTTAATQEVAPDRRESEPRRASEAKPTREHPAPGGKHEEQPAVRRGGKRRRVPKEDGSAGPIRYFLTKTTSNGAPELDQEMPDEHQALIAALKQDRSFVTVTEWRAKVDIKKGAPVIEKDPVVRE
Ga0209039_100105683F003703AGGAGMFLHRVKMNWKKHQTLTLTILLVALARIVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYRKLSTFVGALRRFCRDYWSKTAAV
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