| Basic Information | |
|---|---|
| Taxon OID | 3300027822 Open in IMG/M |
| Scaffold ID | Ga0209633_10071158 Open in IMG/M |
| Source Dataset Name | Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2226 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine → Marine Microbial Communities From The Santa Barbara Channel Oil Seeps |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Coal Oil Point, Santa Barbara, CA | |||||||
| Coordinates | Lat. (o) | 34.39225 | Long. (o) | -119.845662 | Alt. (m) | Depth (m) | 47 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000816 | Metagenome / Metatranscriptome | 879 | Y |
| F007437 | Metagenome / Metatranscriptome | 351 | Y |
| F030575 | Metagenome / Metatranscriptome | 185 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209633_100711581 | F000816 | GGAG | MSLDKKAQPYRTRKASKRVLVGETPAEEAARLEKEIAAHPVTRCEPAERSSLSSRPGWSSNAFIPLQERNVAEGIAKKMMRKPKTKS |
| Ga0209633_100711582 | F030575 | AGGAGG | MRKIYVSDSGNDKNDGLTQETPIRSWQRFIQLCEGNDEIIIMGNADTGKMRLIAEIDKKGRIAQGQSAPKVS |
| Ga0209633_100711584 | F007437 | GGAGG | MGSRSPRPDLYDPRTLEALEQAFDATWLTLQTRDSFRDFERDSELKTDLSLKLTALAKDGVTDPVELREWALESFPLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |