| Basic Information | |
|---|---|
| Taxon OID | 3300027816 Open in IMG/M |
| Scaffold ID | Ga0209990_10006601 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7657 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → Hymenobacter defluvii | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F060725 | Metagenome | 132 | N |
| F064518 | Metagenome | 128 | N |
| F100712 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209990_100066011 | F064518 | N/A | QLASERLNERYGWYLTIKKVAESGLFNLTGFTPMESAEKAKLYQVFQYLASKAAEEKVIDDISKSKK |
| Ga0209990_100066013 | F100712 | N/A | MLEGLQKLADDISTLAISVVATEWRAQGHELTGSAVKQMETMIRFEINTLVIEGIVPDYMAINNSGVPANKIPYYPGSGRKESEYIKGLMRYVQQRMGKSEKESKGIAFAIASKHKKEGMPTKASVTKYSKTGRRTGFIEIALEKNSQKFIDLIEASIRFSVEATIESFYKSILNR |
| Ga0209990_100066015 | F060725 | N/A | MIKLFIGGQEVDLNQDEVNVTIDYSIENIDLGNISGAHSKRNVTLPATKTNVSIFQNITDAGAIVTSAYKLLSARLEADGVPILTGKARLEGADLQAINSGFLASSFKVSLIGNNADWFADVGNILVRDLGWSTIEVSETTVKANYNPVTAEYCFILMKWKAWDNETYILYNELTPAIFIWQILEKAFANKGYQLNSIFKTDPFNRLIIPMGLELGADYLNDFVNLRASIPSPSLIDNITNPSPVLITFTDETTSPNFDTGGNYSSGVYTVPITATYTLKAELNIANTILVPTPTDEILVGWEINGVFEEGEDLGQEPSFNDSVNIEFLTDLVEGDLVRFVVKHNNCGFLMGLNGSIEITGSKAIFETGRTFDLQYVIPISWYVRDVIADLTTVFNLAWETNVQSKQVYAYPKDDYTIRYRADATGAISLTTFEGFFKGSDKYDLNTRDLEGSEFQILDGYKSSQVLAYATDDDTTNKEEARRGVNIYSGGYNFPSDRFDNGVEFIYTKFFAKTIHISDVDITSGGIYGAQMPLLFGDDYNTVTDAEPNYNLAPRLLYYAGRRSGLDGYIRLYDEASSAASAFDFPAAFMVNYNDPSGGDFNLSFSDEVTNYTNVMQGIFKTFHLQTYKRIELGKVYTTFAKLKPKDITQLSFRRKGIIGSSNFIIQSLEYNPKSNSPAKTVLLYDEKPNVNDLTKVSNTITLAGSTPQSGTVTGSGSGLVGANGASVNIQLSYTPFLNSNTNVLILSANSGITQVSNTNANVLVFQNGQKLIPTIQYIISGSTVGINVNTHYDGANYEVVVNGVTKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |