NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209090_10044280

Scaffold Ga0209090_10044280


Overview

Basic Information
Taxon OID3300027813 Open in IMG/M
Scaffold IDGa0209090_10044280 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2517
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)67
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045129Metagenome / Metatranscriptome153Y
F049660Metagenome / Metatranscriptome146Y
F095485Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0209090_100442801F049660N/AMKAYSGKPRGRVNQGGATHKKDADKLNQSFGKNYNSIDFEMSSHLSEANYKEKTNPIGTLVVGNQRVDLTWSECNKIFTTLLDAQQTHRRKIQLGMFS
Ga0209090_100442802F095485N/AMNAEELFKELGLGDKDMSSAREWVNYKHFSETIPDILTLKEYMDTVYKHAVAIDAKPHQWFSERYMTDRYLLSNVGIDDTYIIKLESKILSICEKYDTLELHIEKFLSLIVSSARKSKLALTKETLLFLNEIYKIN
Ga0209090_100442803F045129N/AMSIHYIDEPYQQKVIEILSSDTDVETKYSELKLYLVREPYFKNFTSEPAWLTKEIINDFN
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