NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209656_10000003

Scaffold Ga0209656_10000003


Overview

Basic Information
Taxon OID3300027812 Open in IMG/M
Scaffold IDGa0209656_10000003 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)236258
Total Scaffold Genes184 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)154 (83.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F001520Metagenome / Metatranscriptome679Y
F002979Metagenome / Metatranscriptome516Y

Sequences

Protein IDFamilyRBSSequence
Ga0209656_10000003181F001520GGAGMNGIRFLFAAYIATWVIHGVYLGSLVRRFSRLRQELKEVGKEK
Ga0209656_1000000362F002979AGAAGVKSRSKSEKNTKASPALRMFLVPCSCGTTFAVAENYDHQGTAWSRYLVCPGCGKRHDPKNRLLQMGFHPEGYWTVDQC
Ga0209656_1000000380F000036AGGMAYKETFWMACDSTEQLRAEYGPFHTRAEAEREAKKLGFGYLLRYEHILGESEEIQEVRCIFVELPGAAPVGVEAVPVTLHTRCATCGESAAHEKGWQAEVWADIHEFEHSRHRVRLFEHARGKGLKEIGDWRG
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