NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209985_10217910

Scaffold Ga0209985_10217910


Overview

Basic Information
Taxon OID3300027806 Open in IMG/M
Scaffold IDGa0209985_10217910 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel6S_1000h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)899
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002868Metagenome / Metatranscriptome524Y
F017273Metagenome / Metatranscriptome241Y
F032936Metagenome178N

Sequences

Protein IDFamilyRBSSequence
Ga0209985_102179101F017273N/AAAKKVAAKPMGYAKGGMTFKPCPGCPNAAKCKAMGKCMKKGK
Ga0209985_102179102F032936GGAGLSQLPDPGSPAEVARLALGGIKEAIKVGREIKQTGAEVNSFLDEEARARIAWKKKQLQLERRGDLVFVDAATEYREVRKIKDAEEQMYKNIGIEFGKAAVGEVKALVAQMRKERQTLDHEFQRMRAEERLTWILIFLFAGIVYGILKATGAW
Ga0209985_102179103F002868AGGMAEEKLNANDTLSKVLAYVDSPFKLFALIIMAVLAFAGYFVYDNRELIVGTYKEHQKLPQIAEGRVDDAATHLFKHTGAQVVAIFKVNPITNS
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