NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10013125

Scaffold Ga0209229_10013125


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10013125 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3524
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F005531Metagenome / Metatranscriptome397Y
F006744Metagenome / Metatranscriptome365Y
F008132Metagenome / Metatranscriptome338Y
F021757Metagenome217Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1001312510F008132AGAAGMMTKWDTIQEDVKDAYVYLDEEEVIDEDEDDIFGFSKAIELDHLTDEELDNVATMLGIK
Ga0209229_1001312511F024319AGGMTNRIWESRNDYQNDAQRLGYVACSAGCGRVTAWSLCVMCGGEYATHNLLGK
Ga0209229_100131254F006744AGGAGMNLEEFKKHVTAQREASKAEALSVLSATITETNKGQ
Ga0209229_100131255F000447AGGMGYIEIFRMDEEGASWVDLSEATPEELFQIEIGLLNEGAFE
Ga0209229_100131257F021757GGAMITRKHYIATADILASYKDLIGDEFTFHDLVDEFAGMFAEDNPLFDADKFITACNK
Ga0209229_100131259F005531AGGAMTITYTLWQGSQLLAVNQKAKNAEEIFAVIKELEKLGKGFTYNIREVDTSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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