NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209358_10076943

Scaffold Ga0209358_10076943


Overview

Basic Information
Taxon OID3300027804 Open in IMG/M
Scaffold IDGa0209358_10076943 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1901
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F009126Metagenome / Metatranscriptome322N

Sequences

Protein IDFamilyRBSSequence
Ga0209358_100769431F009126N/AMAISVLSGSPQTATPVYNKMIFKVSGSLTSATNYRYVCDVKDSAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGNTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGGTYFPAFIADGVSRALTTPTTRTVYSTDYGFICMGQSGTPFDRV
Ga0209358_100769434F000557N/AFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ
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