| Basic Information | |
|---|---|
| Taxon OID | 3300027804 Open in IMG/M |
| Scaffold ID | Ga0209358_10046804 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2577 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006220 | Metagenome | 378 | Y |
| F007310 | Metagenome | 353 | Y |
| F008494 | Metagenome / Metatranscriptome | 332 | N |
| F010398 | Metagenome | 304 | Y |
| F103250 | Metagenome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209358_100468042 | F006220 | AGGA | MKKFKRFVEELAIASGTEMMRASQMRPTSFKDKSKYSRKVKHKKVENND |
| Ga0209358_100468043 | F007310 | AGTAG | MRTVLWNDTERWFNHHHYEFLIQDITGFNLQESLCSESIKYMAKRLNDTPYHRIFRSKYSVYQDEYKSLVEKFNHQADNNGRIVVQNEKVQAFC |
| Ga0209358_100468046 | F010398 | AGGAG | MQISIQGVLKVNYELTVDEDVFNEACEDAGLDPANYKSFTKDEWTELNSHIVQVVFDNEQELDYTEIHSQKSIMVDTVTIDDPKQMTTVYYNQDRITDSIEIM |
| Ga0209358_100468047 | F103250 | AGGA | MQKIEINTKYGWSTAKIGRYTNGHLGIQLFQDGMPLAKISTNLNDIEIEPREFHFDDNNCGSIKEDVLKSGHFEDTGKSHKSGWCEYPVFRLKDHVEVVEG |
| Ga0209358_100468048 | F008494 | N/A | KTYTNSIDKTAQTNIAYKKAVYALEDAVNQIYRDVDVKELGSNAEQRNAKISAQTSELIVAKRELEYQLEVARAEEARAKTECDQIKYIIRALEVKEEA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |