NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10138962

Scaffold Ga0209107_10138962


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10138962 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1254
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053831Metagenome / Metatranscriptome140N
F063331Metagenome / Metatranscriptome129Y
F088345Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_101389622F063331AGGAGMTDIDNFALLNDLKELLRQVDLGDTEQVRSELQDIIDRVQADCDERHRIYLERVERYMGHVDSALKTKGDK
Ga0209107_101389623F053831GAGGMSNWQKLNYSGDKFKPFHIKLDYCDEDMTLRDIYKYDDDQEWIDKTAQEITDGYKYFVILRARVYLAGVEVGSHSLGGLLFDNTDEMENMMRLDYEGIIAEAVETAKHNLKQMADAMKERATA
Ga0209107_101389624F088345N/AKYYRVKKMDELEKFFLPPDIQSWIMRYDAGSEQALVKQVPLTPDNITMIDRLAGMMLVTRRYRGPRHNSRNFTRDCPKKDAERVSVYLRERVA
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