NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209107_10133561

Scaffold Ga0209107_10133561


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10133561 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1287
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051132Metagenome144N
F092067Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_101335611F051132N/ATMDNNKINKIQDLLEDEEFKVDNFEFKLWNIRSSWADSLFFDFKVHNPNDESFCRQCLENSLYEELKPYLKYLGIEEKVMVNIFDKNEKLESFYITDDFINGLFDEIKKITDINHDDEYDDLVIKIKQEPTKITLEEHTTGNGLNITIYAKYIDHYITRDGNFVNLGPLNKGSIWSVFKEYNNFGEEWYNDVITNYAEKFRPMQCVGFFIETIFI
Ga0209107_101335612F092067N/AMIFIIMEITRIGYQKALNSYLPRKYPFVERVDITKGPGIKMGMFICNLNVTTKEGFYKRIKGECKERFKEGDVISFWPFIQCFGKNYDIIGFEKDIQIIYTELTGLKSIARDITIKFELR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.