| Basic Information | |
|---|---|
| Taxon OID | 3300027797 Open in IMG/M |
| Scaffold ID | Ga0209107_10029921 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3123 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F059963 | Metagenome | 133 | Y |
| F070107 | Metagenome | 123 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209107_100299215 | F070107 | AGGAG | MIRVQVTERLIFEAEQLIDDPVNKTSKYWTKGTAEQRFIGALGEIALIDYCWNNDLLAHKNNSFENDVMLFSRHTIEVKTQKVTNAPEIHYRVNFPAKRKKNESSDFLFFTHVQFVAGTAEAVWLLGGCSWDKFWRLSTFHNQGDPMMRHYADGNDIPSGRYFTSDCHDLPISQLAPPSATLKHFKSLQEKEPTQ |
| Ga0209107_100299216 | F059963 | GAG | MSPDPVISKWMQPIRPLRVLFQSGDSNNPNRHYIYIFAVRTIGDECEYLTIDGLNLQARSRSVMFAETLIGNDWTRLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |