Basic Information | |
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Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10017671 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4083 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012867 | Metagenome | 276 | Y |
F014736 | Metagenome | 260 | Y |
F029756 | Metagenome | 187 | Y |
F050374 | Metagenome | 145 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209107_1001767111 | F029756 | GGAG | MTKRKITTRIMLDGVVDNTYTQMRQVYTDDKGEYVNCDRNRYHITNDSFDIVYTTGRAFTFAEVLKDLI |
Ga0209107_1001767112 | F014736 | GGAG | MNTPVVPDNVIKMWADPRFQILAEVDKLLTGSKTWAGMEYTYHPIHPDKYKPVAVKVRKALYDLQAEYGVLE |
Ga0209107_100176715 | F050374 | GAGG | MIDYKFIGWNNKDGSDKVWGAIYMEDRTISRPKVLIFWGRRGHKLQTKMDREGWDLDKLVREKCNKGYRTIYDYQLDNVYPEFLTDLEKTTMWALLKL |
Ga0209107_100176716 | F012867 | GGAG | MMKDFVYEQQRESITEEWGDEISQPLLSEKLNVPRVSYRIYYSKDNLTRRIFIFRGNCTPAVTEIMLGLGFTFAKDGDTENIPDQSVEEVEQ |
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