| Basic Information | |
|---|---|
| Taxon OID | 3300027797 Open in IMG/M |
| Scaffold ID | Ga0209107_10013914 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4563 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. TMED43 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019798 | Metagenome / Metatranscriptome | 227 | N |
| F025224 | Metagenome / Metatranscriptome | 202 | Y |
| F028490 | Metagenome / Metatranscriptome | 191 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209107_100139142 | F019798 | AGG | MTTLVAIQGDGWSVLGCDSRLSDEHGRFQIAKTPKIVENNTVLIAGCGSSRASNILHYGYVQPKPTLKEDLNTYMTTKFIPQMRKNFIDAGIDMKEDGDVALIDGGFLVSVKGQVFSISEDYSWDTDVRNVYVMGTGGDVALGALAALGVEKVKTINQAENMIRKAIAIAIQYDNMCSEPIHTFKQYA |
| Ga0209107_100139143 | F028490 | AGGAG | MAENRGGMRPTAPQNNPANVSGTGGAGQNGNYTGFAYGQNQAVNNQRIEGNQAVASAQAATPSAPQDRYAGMNFPQLGTLFDPTTRPDEPITAGVDFGPGPGSEALPKNLMNDSRMDENAKIAQEYLPDLAFAAQSPNAPDSFKRFVNYLIENARGFNNNG |
| Ga0209107_100139144 | F025224 | GAGG | MADAMWMPGSFFDNVDKFANSLGYQNAGIAMELAMMSWNSPEERDAFIISITDAEVQGGTEKKYIKRKY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |