NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10007483

Scaffold Ga0209107_10007483


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10007483 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6125
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F078706Metagenome116N
F083714Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_100074832F000934GAGMSLNTILAISESVGINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRSLLSTLRVNDKSLEQYLNFTNIGWLNYVAYQGDMTSGQIVTCEWQTASANKTLVLGSLPSISSSAYIVKVGDFCQVGRYAYIATADVLRGSGSTVNIPVHRNLITTLSTTVGAVIGQYGTTVSMGGSTYQGATFPVILREYPTYTLVPMTNDSFIQWNGSFVAIEDVL
Ga0209107_100074834F083714N/AMVFNGHTIQDIDALDEATMNEITVMYADGLVGNRSLLNMQGTLIAGVFNYLRASNSQPYTLKSVLGSAYEYFYGIEKADPSESLLTFMSQAPDFKMNRFQGK
Ga0209107_100074835F078706GGAMSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVQEIEAIYNYFKNPNEEKIEAEYQLMIKAFENLKDQEGVEVKDNDFIIDGRSIRETAKNKHILQHRIVQYIKFLIPETGSLEDITYEDVETEFPLTVQMTLVEKINEVISPDYKDIKSK
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