NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10006100

Scaffold Ga0209107_10006100


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10006100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6782
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003750Metagenome / Metatranscriptome470Y
F004669Metagenome428N
F015209Metagenome256N

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000610012F004669GGAMKLWEIKNFQSSSVKALFVGQTANGQDCIACAWNSSELYVFAYEGIVDTFLWALEMFQSVGQAMAYAKLKNGMEERSYSLPYQVTMEQRTHNQLYRFQLQYLHIFESTLVIHQNLSQDTPENAIKNLISRGDIEAENSRLIDIFRKREVCA
Ga0209107_100061002F003750GGAGMTEEIINRTMQVFLYTGGFVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFAGCLAGVGLLCGIWMVMVQSSRELQGKKQYQYVVL
Ga0209107_100061005F015209N/AMNSYRRKALSLWSDLLEEERWHKFESTNCKPSCKGWNGWAPYCECFENSCTFVPKGEIEDMELVIIAKPIDDVLRNIQVIP
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