NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10005743

Scaffold Ga0209107_10005743


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10005743 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6982
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F003658Metagenome474Y
F008237Metagenome336Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000574310F001515AGGVATKSSFDLDFGYGRKGEQLVDELLTGGHTVEVKRDRKWFKTNNLYIETECFFQKVGDWGASGLGVTEAAYWAFVLQESTLIVPTDVLRYAVKEFGREISCFIPPNQSKGFLITVDDLMTATRKYKEDDRVE
Ga0209107_100057435F003658AGGMFDLQGEPTFACICGCLMFEITVMWDRWDRSIGWYDLKQKCKECGSLSTAPTPIDGEDDAYL
Ga0209107_100057439F008237AGGAMIEWNRIERWQYIVDAVASDYHRKFSPIEYDDIRQSLYQWFVEHPNKLDTWEAIGEKDAKNLLYRSLRNQALDYCQHWKAKSGGYEASDLFFYEADMVEAILPAVLRGEHGLGAKVDLGRPSSSSAPNEGGNMMAMMIEVDYGFWKLPKDDRKVLFLRHAESMDFGAIASELQLGSEDAARMRHKRAIRKLINKIGGFRPFRDDDEAPKQEEEDK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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