NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209107_10001630

Scaffold Ga0209107_10001630


Overview

Basic Information
Taxon OID3300027797 Open in IMG/M
Scaffold IDGa0209107_10001630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12580
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameLake Erie, Canada
CoordinatesLat. (o)41.77Long. (o)-81.73Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F003299Metagenome / Metatranscriptome495N
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0209107_1000163012F003299N/AMCRLKIMIMKIYKVVYKTFDYWNGPVKLVTRIIEAYDADHVKQLIQKNDDLILLIEEV
Ga0209107_1000163015F004234N/AMNFINLFKRDNTYFSNWTTDYDSDVYIAGTIQPFTYDATETDDGDMSLFILNDANLNLLKSKL
Ga0209107_1000163016F015420N/AMKRLIKYLTPVGAEQIAFAKALMVVVTAIISIVFLFPLLTLLS
Ga0209107_1000163019F001808N/AMRYLAIILLLSSCSSQYHLNKAISKGYACEQTSDTIRITTLDSIPVIIRDSIVWEKIINTKDTIIKYKTVYVPKTRQDKRIEYKIKVKTIYKDRVVEKAQAKAEVQKAKAERPKGRGNLNLLFVGVGIGLLLSYLLKFARQKYLF
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