Scaffold Ga0209107

Basic Information
Taxon OID	3300027797 Open in IMG/M
Scaffold ID	Ga0209107_10001195 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027797 Open in IMG/M

Scaffold ID

Ga0209107_10001195 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14473
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

14473

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (37.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Lake Erie, Canada
Coordinates	Lat. (^o)	41.77	Long. (^o)	-81.73	Alt. (m)	Depth (m)	20
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erie, Canada

Coordinates

Lat. (^o)

41.77

Long. (^o)

-81.73

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042808	Metagenome / Metatranscriptome	157	N
F072266	Metagenome / Metatranscriptome	121	N
F082227	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209107_1000119514	F082227	N/A	MIVPVNIISVQCNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDDLTGQPTEVVNIANAIWK
Ga0209107_100011952	F042808	AGG	VDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWTKLLKFADPTVLYNGGYYNAAVELAFKEGLFQGCGTYVSDNGDPYIFASIGGKVFQIDINDGFKVNDLTPVASQFFVFTRGRTSNVATYVTGAPHGLSAGMVVRLPEVPGATAPAGFFGDFVVQTVPTLTTFTTFSPGTDAGPFLGPAFFGYQLATNNPSADHVYFQQAEDWLIIQDVQNQPYLYNGSTLRRATGEEVPVGGPMAYGKGRLWVANGSEYYGGDLVYGDPAYGRDSVIRFTENTFINEGGAFAVSNGPITGLAFAANLDTSLGDGDLLVFTPTATYAFNAPVDRDVWKDLNYPIQRFALLNFGSFNHESIVPVNGDLFFRAQDGIRSLIYARRDFSEFGNTPISRQVTRAIAYDTEFYLKAASSVNFDNRLLMTIQPQKVNGRGTVHRGVVVLDFDLVSGMGRKLPPAWEGVWTGVDVLQMLTIRIQKQDRCFVFGLNQDNIGLFEITKNGQFDFDGYDDVPIEWTIETRSITFGEPTNKKRLVSAEQWYDQVMGDIEAKVYFKANEGECWQPWAEIKDCAKYRNCEPGEISCPPAVINCQEVKYYQPPARSRIALPQPPDKCDVQTGGFTRDGYEFQLRYVNTGRFRLKRVAMVAQRLQEDIYGDLSRVACPLLS
Ga0209107_100011957	F072266	N/A	MTPKQEFQKNQQRLNELKRLLDNQDLQAALLVAFNNFCWNLPASENPQHGWSANCRRQGAKALIDELNGLAEMRKDKPTTTQNLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209107_10001195

Overview

Ecosystem & Geography

Associated Families

Sequences