| Basic Information | |
|---|---|
| Taxon OID | 3300027797 Open in IMG/M |
| Scaffold ID | Ga0209107_10000298 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29621 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (83.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, Canada | |||||||
| Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001599 | Metagenome / Metatranscriptome | 665 | Y |
| F001706 | Metagenome / Metatranscriptome | 648 | Y |
| F008808 | Metagenome | 327 | Y |
| F026858 | Metagenome / Metatranscriptome | 196 | Y |
| F041080 | Metagenome / Metatranscriptome | 160 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209107_1000029811 | F001706 | AGTAGG | MAKHWEAHPTYVEGCFGCKGMSLQMNSGDAKRDVPDKKWNAELQAYRDARAQGIQPAGTTMRHVEEAHKASEHLGRAYDADTMPKAKDINHKSAEVMKELGV |
| Ga0209107_1000029824 | F026858 | AGG | MSDNLLLDLTPSEVTLIRSALRTEQDRHKRSNFVTLELSVQDLRNKISNAMIDNANLNRKAGV |
| Ga0209107_1000029827 | F041080 | GAGG | MSNTDTILGLAEELRVIADEIAYNTYAESTDFTKRGTIVKAKEVQNRFKPKSMWVSLGDGTYKHITGKKGLVTKQSRLDGFVDVVFEA |
| Ga0209107_1000029839 | F008808 | GGA | MINRDECPECGEKFENVFEATDHLLEEDDEFDPALILPNGYKLMIGSLLKCLYRYADSPDDVKRIAQETYLTLFLAETDPRTIVDTIEDMIVSSSVADLDNELKQLLEDKE |
| Ga0209107_100002984 | F001599 | N/A | MVDGKFMQGVTDVMLHSGIKFATTLRSQGNQIGRQRETAVNYWYDNNKSDWLLWVDSDVVLSPEVFLKLWKKKDALTKPLLTGVYFTTDTPEEPLMIPMPTVFEFVNEENSVGIKRIHPLPENQFLKVGAAGMGFVLMHRSVVDKIKAAVPGAPLFTEIGVNKSFMGEDIYFFALCDKADVPVWCDTSAVVPHMKRFSFDEHYYKAFFGKSKEEPKSKLITPDKKIITPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |