NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10011280

Scaffold Ga0209972_10011280


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10011280 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5953
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F074876Metagenome / Metatranscriptome119Y
F084138Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1001128012F084138AGGAMANNVTVLEGIIGDVAIALYQKWYNAMPVEEKNELAEEALKKNAQETTLFIIQMFMDKFNQAAEELKNQD
Ga0209972_100112804F000473AGGAGVSSNHFYDNNHFKHGINQWTGEPNKPVFYNDEMKKKIREIKQPMLLMMDIAMYPEFLAIRLYEDNFLQFDGSKKEEVISYVDKVKKVIESFGVRCELEGVPSARIL
Ga0209972_100112805F074876GAGGVQEYYEIINIVYIHEEKVYGTVDQLGAFASLVKYKKDGIEQEVLLENDEFAIVDEIVFHHVEEDNG
Ga0209972_100112806F000671GAGGMDKILCYSCNKSKHKLNAKKSTLLPINLLMCESCINSKLEPRWLIILAGRSNGADHVREFVLKKRYIGNEISASELLV
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