NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10009317

Scaffold Ga0209972_10009317


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10009317 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6702
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002489Metagenome / Metatranscriptome554Y
F003643Metagenome / Metatranscriptome475N
F021111Metagenome / Metatranscriptome220Y
F076926Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000931710F002489AGGAMTEEQKSENLEDNLEMVNYIMLHRIYDLLTLISNKLVGPEDTAKMVAYHDQGYLLGPSPSYTPDNSQENS
Ga0209972_100093174F003643AGGAGGMKEDFNNDGKVTMQEKLLAALASYGRHFLGAAIALYMTGNTDPGDLVKGGIAAVLPVILKALNTNEPAFGFTKK
Ga0209972_100093178F076926AGGAGLKIQTVSKYLALAEEGLVPELNCPLDQGLLMPNQDLDDKIYLYCLSCQYKKEIGLKFYEQLREQIERSN
Ga0209972_100093179F021111N/AMNNSENKLKDLTDPIKTDGGEIKETDAMGREKFWEDLGRPND
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