| Basic Information | |
|---|---|
| Taxon OID | 3300027793 Open in IMG/M |
| Scaffold ID | Ga0209972_10007375 Open in IMG/M |
| Source Dataset Name | Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7753 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (95.65%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio, Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.69957 | Long. (o) | -83.2941 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002827 | Metagenome / Metatranscriptome | 527 | Y |
| F005146 | Metagenome / Metatranscriptome | 410 | Y |
| F010680 | Metagenome / Metatranscriptome | 300 | Y |
| F016263 | Metagenome / Metatranscriptome | 248 | Y |
| F088554 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209972_1000737511 | F002827 | AGGAGG | VNKEYYQAKADLCRDLAIKQMVEGDSKEAGANLIRMVNALNELQLINYKEEKNETV |
| Ga0209972_1000737513 | F016263 | AGGAGG | MPKCGVCGWNFSDRTLTKHAETACGLEEEKADRVAYSPEIDDLIKEMEESNEYR |
| Ga0209972_100073753 | F088554 | GGAGG | LTEKYSWYKAALRRKKIEEAKRLKAARYVDEMNKRANDKSTTSNTQ |
| Ga0209972_100073755 | F010680 | AGGAGG | LAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKQRKNISDVGDLEVRTVRTQSAIPFWKKDVGRTIVGTKVLDEEYYSLVEIYGKFQADDFMIEQFSDPSIDGWRVPVELLEV |
| Ga0209972_100073759 | F005146 | GGAG | MKLVNFYEVMDRKGDIAWGGASPSDAVEWFRRGLDNSIFVSVWNEQDIENPVLVTDKIEVTALVLATITSERSRG |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |