NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10006138

Scaffold Ga0209972_10006138


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10006138 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8669
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F014847Metagenome / Metatranscriptome259Y
F016528Metagenome / Metatranscriptome246N

Sequences

Protein IDFamilyRBSSequence
Ga0209972_100061384F016528N/AMINNNELFAKVLADNPLPYHFGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLDNYYIDVETVYGKVP
Ga0209972_100061385F014847GGAMLKLYTERFPNMDFESNEQILADLMDNIRTLHEENAKLMQEVEQLKEENKELNRKLKSIQALFL
Ga0209972_100061387F000962N/AMNIHVPDEIKNKYPHMEFRGKQRIINDRTVIEAYNHVTDQNFFYSFEEDFFWFAGQIPDYKLPKIN
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