NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209972_10000552

Scaffold Ga0209972_10000552


Overview

Basic Information
Taxon OID3300027793 Open in IMG/M
Scaffold IDGa0209972_10000552 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36862
Total Scaffold Genes56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (96.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Lake Erie, Under A Cyanobacterial Bloom.

Source Dataset Sampling Location
Location NameUSA: Ohio, Lake Erie
CoordinatesLat. (o)41.69957Long. (o)-83.2941Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001515Metagenome / Metatranscriptome679Y
F001531Metagenome / Metatranscriptome676Y
F030732Metagenome184Y
F068608Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209972_1000055216F068608AGGAGMARGGANGGPQYNPANVSATGGAGQSGKFVAEKVAKATQLRPSGFPQGENKALAEQMSAGGNVASTASAANPTPETPAAPAMGGLAELMSQVQPLDAEPTEYLPISDGVDFGAGRGSEALPPRFQQDNRTIENVDLVKRYMPDLLNAARMPGAPDSYKRMINALLREVM
Ga0209972_1000055238F030732GAGMVCVCGSMMWNVTVMWDAETRTVAWYDLRQECKECGAIATAPTEID
Ga0209972_1000055239F001531GGAMDWERIKRWDYVVDAVASEYSRKFDMVETSDLRQALYQWFLEHPNKLDEWEAIGEKDAKNLIYRSLRNEALDYCQRWKAKSVGYDVGDLFYYAPDVVEAILPAVLRGEFGVAHKLNLGRVGRPTAPAEGGNLLTMMVEIDWGFWKLSKEDRHILFMRHAESLDFKEMANVLSLGSEDAARMRHKRSINRLIRKLGGFKPYLEEDSKPAEEPEDD
Ga0209972_1000055241F001515GGAMKNSNFDLDFGYGSEGENLVNELLTGGRTVEVKRDRKWHSTNNLYIEVECWYMTTQSWEPSGLSVTTAAYWAFVLESSTFIVPTYVLRQTVLEKGRQITCDIPPNKSKGYLITVEDLLGGTKKWGKQ
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