NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209830_10128336

Scaffold Ga0209830_10128336


Overview

Basic Information
Taxon OID3300027791 Open in IMG/M
Scaffold IDGa0209830_10128336 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1233
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016209Metagenome249Y
F040868Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0209830_101283361F040868N/ATSKQEAIISLLDVQTNQPVLLPNNTALTEDGMQSLSWQTIRDLYVKVKSAYYNSQDNSKR
Ga0209830_101283362F016209N/AMTIQDAEYLEHSSYIDYNKPHYSKFMGYQLDNKKVIAEEWLLKPQYLSTGINTYDRKSGHFSNDLSNNGRSVIVIGTELQTFRKFEHMLKTYGWQTQDDWQVELKPQYLEYYKENNNSPIIINLK

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