NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209830_10033616

Scaffold Ga0209830_10033616


Overview

Basic Information
Taxon OID3300027791 Open in IMG/M
Scaffold IDGa0209830_10033616 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2848
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)77.0991Long. (o)-150.2252Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050008Metagenome146N
F063167Metagenome130Y
F080621Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0209830_100336162F063167N/AMKTNKPTKLVKTDEQEENAFIVFWSIIIAGILLAVSIIINYL
Ga0209830_100336163F080621N/AMQTITEIIKDLSLDIDCLIDEPGEATERDLIKIMDRITELENQ
Ga0209830_100336164F050008AGGMNPYDNMNETQRELVLDLAEDFAPFVKKVESGMALTQNHYGAYGSMISKLSKGNRAVALIFSYALMMAGANGQGISDAMKSFFPK

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